LOC_Os06g33710

Expression Profile

RGAP LOCUS ID LOC_Os06g33710
RAP-DB ID Os06g0528600
Function spermidine synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization Cytoplasmic
score 3.423

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Cytoplasm
score 87
confidence value 0.79
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSPDS2|OsSPMS1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.101
NLS score 0.47
Protein Sequence >LOC_Os06g33710.2 protein
MEGGGAKDGSAAAAQTRGSGDDGSHKPLPPCCLKAKAAAAESEAKCHATVVSGWFTEPRSHSGKTSKVQYFNNPMWPGEAHSLKVENILYQGKSPYQEIL
VFESSTYGNVLVLDGIVQLTEKDECAYQEMVTHLPLCSIPSPKSVLVVGGGDGGVLREIARHASVENIDICEIDQLVIDVCKDFFPQLSVGFKDPRVQLH
VGDAVDFLRNAPEGKYDAIIVDSSDPIGPAQELVEKPFFQTIARALKPGGVLCNQAESMWLHTHLIQDMLSICRETFKGAVHYAWTSVPTYPSGVIGFLL
CAKEGPAVNFLSPVNPIEKLEGAMEAGREIRFYNSEVHRAAFVLPTFVRRELESHNTCAEKDKSETKPVAKPKKMKIMPNSAIPTAS

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Cellular comBiological Processonent
GO Term cytoplasm
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES