LOC_Os06g24730

Expression Profile

RGAP LOCUS ID LOC_Os06g24730
RAP-DB ID Os06g0354700
Function hydrolase, alpha/beta fold family domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 2.152

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.82
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) NYC3
Function assigned as per literature NYC3 has role in the regulation of chlorophyll degradation
Subcellular localization as per literature Plastids
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 19453447
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2009.03919.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.097
NLS score -0.47
Protein Sequence >LOC_Os06g24730.1 protein
MEVVSSSHSCLAFNRTPSSAWRFPGNGLGPGHAKLTRPRSAILCVRSGTASNPADSGKVHASHGFYVSDVDAALQGIPKKVGEIEKMIIPSLPEGPESSL
ISTGFWEWKPKLSVYYEKSGIDNSKAPSVLFLPGFGVGTFHFEKQLKDLGRDYKVWTMDFLGQGMSLPCEDPAPKSTSGELDEDTYWGFGQELQPWAEEL
VYSIDLWRDQVQHFIEEVIGEPVYIVGNSLGGFVSLYLAASCPHLVKGVTLLNATPFWGFLPNPATSPRLSKIFPWAGTFPLPSFVRKLTETVWQKISDP
RSIQGILKQVYADHSTNVDMVFSRIIETTQHPAAAASFASIMCAPKGQISFEEALSRCQRQGIPISLMYGREDPWVRPIWGIKVKQQVPESPYYEISPAG
HCPHDEVPEVINYLLRGWLKNVESEGSVAVPFLEEPSYAENGVSRELEFVRGGSKKSVHVRLFGSKISLWSQLRSLLKSNTWVISR

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term hydrolase activity
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term catabolic process
5
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES