LOC_Os06g20920

Expression Profile

RGAP LOCUS ID LOC_Os06g20920
RAP-DB ID Os06g0314600
Function SAM dependent carboxyl methyltransferase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization golg
score 4

2) CELLO Prediction
localization Cytoplasmic
score 1.151

3) NUCPRED Prediction
localization Non Nuclear
score 0.24

4) Y-Loc Prediction
localization Nuclear
score 79.73
confidence value 0.75
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsJMT1
Function assigned as per literature OsJMT1plays a role in regulating plant development and herbivore-induced defense responses in rice
Subcellular localization as per literature Cytosol
Cells used for localization experiment Nicotiana tabacum leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26466818
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/jipb.12436
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.092
NLS score -0.47
Protein Sequence >LOC_Os06g20920.1 protein
MTTKEILHMNAGHGETSYARNSTVQKTEQDRMKMLINEAITGLCEPTSTILPKSMAIADLGCSSGPNALTLVSAALDAIHHHCAQQQQPPPEVCVFLNDL
PSNDFNSVAKSLATLKHSHGDLDDPVVITGIGMIPGSFYERLFPCGSLHFVCSSNSLHWLSKAPDDLKEGKIPMYDMVEHLRVSRRAAVRDAYARQFRKD
FTQFLSLRAQELVTGGRMVISLYGRCSENPISRSNQAWQVVAVALNDMASRGIIDKEKLDSFYIPLYAPLENEVNEIIEDEGSFEINKMLVRNPFSGMDD
ATVSPKMIALSIRAVFESTVVLHFGSSEEIMDEFAKTVEQKLSSGSAWRAVLAAEYPLVLLCLSLTRVI

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term transferase activity
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES