| RGAP LOCUS ID |
LOC_Os06g20340 |
| RAP-DB ID |
Os06g0308100 |
| Function |
dual specificity protein phosphatase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
6.5 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.938 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.4 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
51.36 |
| confidence value |
0.08 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsIBR5 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
Nuclear and cytoplasm |
| Cells used for localization experiment |
|
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
22525239 |
| Reference of localization |
https://www.sciencedirect.com/science/article/pii/S0168945212000398?via%3Dihub |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.103 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os06g20340.1 protein
MRKRERENPCGICGHYHKYELGEVCGVCGHRPPASAGAQAAAGAAQAAAPRQDSAFPSEILKDFLFLGSYDNASRSELLKTIGISHILNTVPLCQNLYRN
SFTYHCLQDEKTLQFDDAIQFLEQCERDKARVLVHCMSGKSRSAAFVIAFLMKTKGWRLSQCFQWVKERRPQVQLADAAQRQLIEYEQKLFNSTVGIPAQ
AFVPTDAFPSLGFGFPKPSGDIQVPIFNQQAPASIFERVSPHNIPSNFTFGAERTTEVKLPDNNSFGVVNSSGGDSMMDSS |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| Presence of Splice variants |
YES |
