| RGAP LOCUS ID |
LOC_Os06g17480 |
| RAP-DB ID |
Os06g0285200 |
| Function |
histone-like transcription factor and archaeal histone, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
11 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.256 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.09 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.77 |
| confidence value |
0.58 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
Yes |
| Transcription factor category |
CCAAT/NF_YB |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsNF-YB9 |
| Function assigned as per literature |
OsNF-YB9 regulates reproductive growth and development in rice |
| Subcellular localization as per literature |
cytoplasm in the vicinity of the nucleus |
| Cells used for localization experiment |
onion peel cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
31482329 |
| Reference of localization |
https://link.springer.com/content/pdf/10.1007%2Fs00425-019-03268-2.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.076 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os06g17480.1 protein
MEPAFPNGGAAAPPPPMAAEQLPPAAAVVREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKTVTAEDLVWAMD
RLGFDDYVPPLTAYLRRMREYEGGGSGGGGGGGRGAAAAPAVVPPPPPPPPEDAFRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHVHVGVRGGGQH
EVFGGGPAPLAVYYGGAPYGEASSRGGCSAADEGSSSSSASPAPVGPNYE |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
