LOC_Os06g16390

Expression Profile

RGAP LOCUS ID LOC_Os06g16390
RAP-DB ID Os06g0275500
Function SET domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.528

3) NUCPRED Prediction
localization Nuclear
score 0.86

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category SET

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCLF|SDG711
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.151
NLS score -0.47
Protein Sequence >LOC_Os06g16390.1 protein
MAGDSRNEPMFCEEGSSESGYVLCVIDSLKKKITSDRFVYIQKRVEENSIKLSPITLHSHNLSKNRQTSTSNSTDLVSNLLTKRKEDALCAVNSRESSPD
ESEGANCQDECSSTVIVGGNLSARNSVRPIRLPEVATLPPYTTWIFLDRNQRMQEDQSVLGRRRIYYDTNCGEALICSDSEDEAVEDEEEKKEFKDSEDC
IIRMTIQECGMSDAVLETLARDIERAPDDIKARYEILQGEKPEGSSKKVSELNVKMEDVYGDKDLDAALDSFDNLFCRRCLVFDCKLHGCSQDLVFPTEK
QAPLCSSDEGTPCGIHCYKLVSKPDAIMEIDSHLLVDVEEPTSDNLKDQIGSNKKKLGSSGQKTKSQQSESSSTARVSSESSESEVQLLSNKSPQHSPGL
SKNKLGAKGGIKKSTNRRIAERILMSVKKGQQEMSPDSNSIVNGCHWPRDMKLRSDTRSGIKDSVVSSQCNSPSTRSFRKKGTLQMENNSSFVDAQSDSM
EDTNNEHSATDGCDSSRKEECVDESICRQEAHGRSWKVIEQGLLLKGLEIFGKNSCLIARNLLGGMKTCTDVFQYMNYIENSSASGALSGVDSLVKGYMK
GNELRTRSRFVRRRGRVRRLKYTWKTAGYHFIRKRITERKDQPCRQYTPCGCQSACGKQCPCLTNGTCCEKYCGCPKMCKNRFRGCHCAKSQCRSRQCPC
FAADRECDPDVCRNCWVGCGDGTLGVPNQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHKEADKRGKIYDRENSSF
LFNLNNEYVLDAYRMGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEGPGAKDDAQPSTGRAKKLAH

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term response to abiotic stimulus
9
GO Category Biological Process
GO Term anatomical structure morphogenesis
10
GO Category Biological Process
GO Term multicellular organismal development
11
GO Category Biological Process
GO Term reproduction
12
GO Category Biological Process
GO Term post-embryonic development
13
GO Category Molecular Function
GO Term protein binding
14
GO Category Biological Process
GO Term biological_process
15
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
16
GO Category Molecular Function
GO Term RNA binding
Presence of Splice variants No