LOC_Os06g16370

Expression Profile

RGAP LOCUS ID LOC_Os06g16370
RAP-DB ID Os06g0275000
Function CCT/B-box zinc finger protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10

2) CELLO Prediction
localization Nuclear
score 2.764

3) NUCPRED Prediction
localization Non Nuclear
score 0.45

4) Y-Loc Prediction
localization Nuclear
score 99.98
confidence value 0.99
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category C2C2-CO-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Hd1
Function assigned as per literature Hd1 is a Floral Regulator which interacts with OsHAL3, a Blue Light-Responsive Protein, to Activate Flowering in Rice
Subcellular localization as per literature Nuclear localized when ineracting with OsHAL3
Cells used for localization experiment Nicotiana tabacum leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 26537047
Reference of localization https://www.cell.com/molecular-plant/fulltext/S1674-2052(15)00424-4
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.091
NLS score -0.47
Protein Sequence >LOC_Os06g16370.1 protein
MNYNFGGNVFDQEVGVGGEGGGGGEGSGCPWARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADAAALCVA
CDVQVHSANPLPAITIPATSVLAEAVVATATVLGDKDEEVDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEVDEYFDLVGYNSYYDNRIE
NNQDRQYGMHEQQEQQQQQQEMQKEFAEKEGSECVVPSQITMLSEQQHSGYGVVGADQAASMTAGVSAYTDSISNSISFSSMEAGIVPDSTVIDMPNSRI
LTPAGAINLFSGPSLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQIEVDQMFSTAALSDGSYGTVPWF

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term flower development
4
GO Category Molecular Function
GO Term binding
5
GO Category Cellular comBiological Processonent
GO Term intracellular
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No