LOC_Os06g15330

Expression Profile

RGAP LOCUS ID LOC_Os06g15330
RAP-DB ID Os06g0264200
Function CCT/B-box zinc finger protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Nuclear
score 1.476

3) NUCPRED Prediction
localization Non Nuclear
score 0.66

4) Y-Loc Prediction
localization Nuclear
score 99.6
confidence value 0.65
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category C2C2-CO-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCOL16
Function assigned as per literature OsCOL16 plays at role in regulating rice photoperiodic flowering, allowing for environmental adaptation of rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 28554475
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945216308512
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 2
Basic residues % 0.123
NLS score 0.76
Protein Sequence >LOC_Os06g15330.1 protein
MSSTAKAAAAGAVGAKSARACDGCLRRRARWYCAADDAFLCQGCDTSVHSANPLARRHERLRLRPSSPPPLVPPSGSGRRDEAVPAAWFKRKARTPRSHA
AKSAAAFGQLLSRRLVVVPEAAAGSGGDSPEERKDEGEIVEEQEQLLYRVPIFDPALSEFCSPPPLEDAAAAVSCCNEDGAVENPTKPSMTTTTATTPPL
QFFPDGQANFGPTDAELREFAADMEALLGRGLDDGNDEDSFCMETLGLIEPVDDDAGRVKVEADGDAGMTLAWCHELDTETSSGEMLDIDFDCGSPQAAT
TPDEKVGSSGPAAADDDAQLQQSNLALSLNYEAIIESWGTSPWTDGERPHVKLDDSWPRDYSGVWMAAAGVFGHGGEEQALTPRLGMDGGREARVSRYRE
KRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRAAAAATAAVATACVA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term binding
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No