LOC_Os06g12400

Expression Profile

RGAP LOCUS ID LOC_Os06g12400
RAP-DB ID Os06g0229300
Function Homeobox domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.753

3) NUCPRED Prediction
localization Nuclear
score 0.96

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category HB-PHD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) HAZ1|HOX1a
Function assigned as per literature Functions as a positive regulator of GA signaling by suppressing EL1
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 21951842
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1744-7909.2011.01075.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.138
NLS score 0.9
Protein Sequence >LOC_Os06g12400.1 protein
MDKTTTSDLVLDNDNIGSNAGSAQEPLTTNGKTSGVRNRYKQTVKRGRKGSQISPSKTYPLRSSHSNVRVLRSASKKKNETPIVPTNDNTAVQRVAKKRK
RSKPLRPAPSRVLRSTSEKKNKAHNELLNDGAGVQPAEKKRKVGRPPKGGTPKDDYLMIRKRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELE
RAKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDC
KIDCIDVLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEGLDSDDSSSEDSESSEKEKSKTSQ
NGRTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSDDFCAEIAKSCGQDEISGPSSSQIRTVDRTDGSGFDGEPNAENSNLAFMET
ELEQDMVLPISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEKGNLEDSETDSLAESPQGGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQT
EVLCSNSNGSTAKNRHFGPAINQKLKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSSTRHYARVAATKKENNIENHTAENNNNTNTVDSIQLRGSND
IVSVDRNDMVSEERTGQSNLNEGTPLRSDTSCGQSVAVTPMVHPENQGNDSSSNVRTPNAKSAEKLIPGLENSDEARRKAVQRELRKMKTGR

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No