| RGAP LOCUS ID |
LOC_Os06g12250 |
| RAP-DB ID |
Os06g0226950 |
| Function |
sphingolipid C4-hydroxylase SUR2, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
E.R. |
| score |
6 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
3.937 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0 |
4) Y-Loc
Prediction
|
| localization |
Secreted pathw |
| score |
|
| confidence value |
0.95 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
DSH1 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
NA |
| Cells used for localization experiment |
|
| NUCLEAR or Not Nuclear |
|
| PMID |
|
| Reference of localization |
|
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.076 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os06g12250.1 protein
MAFAVSDELLGTFVPIAVYWLYSGLYIVLDAMGMDDYRLHPKGEEATKNVVSKWTVVKGVLVQQSFQIAVSLLLFTIIGDESGTVRKQPPALVIALQFII
AMFVMDTWQYFMHRYMHVNKFLYKHVHSKHHTLVVPYAFGALYNHPLEGLILDTIGGALSFLIAGMTPKTAIFFFSFATIKTVDDHCGLWLPGNILHVFF
SNNSAYHDIHHQLYGNKYNFSQPFFVMWDKILGTYMPYTLENRKGGGFEARPIKLNVAEQSKTD |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
endoplasmic reticulum |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
Golgi apparatus |
|
| Presence of Splice variants |
No |
