LOC_Os06g12230

Expression Profile

RGAP LOCUS ID LOC_Os06g12230
RAP-DB ID Os06g0226700
Function TCP-domain protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.909

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.14
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category TCP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTCP19
Function assigned as per literature OsTCP19appears to be an important node in cell signaling which crosslinks stress and developmental pathways.
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25925167
Reference of localization https://www.nature.com/articles/srep09998.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.072
NLS score -0.16
Protein Sequence >LOC_Os06g12230.1 protein
MDVTGDGGGGGQRPNFPLQLLGKKEEQTCSTSQTAGAGGGGVVGANGSAAAAPPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIE
WLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSLSIPSHLRLAGLAGPRFGGGARAADAWDRVVGLGFGGAADAPSSATSSSSSPLLLSFHSGSVGL
DVSPPSASTSPAAADLSRKRRWEQEMQQQQQYQQQMAGYTQSQIPAGTVWMVPSSNAQAAGGGAPPGGGGESIWTFPQSGSGGGGGAATVYRGVPSGLHF
MNFPATPMALLPGGQQLGLAGAGGGGEGHPGILAALNAYRAQAAQPDAGAAAQNGAQGSSQHRQHQHHGGGGGGGDERHESMSASDS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to endogenous stimulus
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No