LOC_Os06g11620

Expression Profile

RGAP LOCUS ID LOC_Os06g11620
RAP-DB ID Os06g0219600
Function RNA recognition motif containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 2.993

3) NUCPRED Prediction
localization Non Nuclear
score 0.26

4) Y-Loc Prediction
localization Nuclear
score 98.33
confidence value 0.92
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPABN2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.132
NLS score 0.46
Protein Sequence >LOC_Os06g11620.1 protein
MADEEHEVYGQEIPLDGEDVDMGAPGDEAAKMQELDEMKRRLKEMEEEANALREMQTKVAKEMQGLDPNASSSESKEEMDARSVYVGNVDYACTPEEVQQ
HFNSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAVQEAVKLNESELHGRQIKVAPKRTNVPGMKQPRGGRGFGGHPYMRPYGAPFYNPYGYGYPRFRRPR
RPYF

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term RNA binding
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Biological Process
GO Term biological_process
5
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants No