| RGAP LOCUS ID |
LOC_Os06g11330 |
| RAP-DB ID |
Os06g0217300 |
| Function |
OsMADS55 - MADS-box family gene with MIKCc type-box, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
11.5 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.042 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.71 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
100 |
| confidence value |
0.99 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
MIKC_MADS |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsMADS55 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
Nucleus and cytoplasm |
| Cells used for localization experiment |
Onion epidermal cell |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
25096923 |
| Reference of localization |
https://academic.oup.com/jxb/article/65/18/5339/2885030 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.131 |
| NLS score |
0.33 |
| Protein Sequence |
>LOC_Os06g11330.1 protein
MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNMRGEELEGLSVE
ELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSESVMTALNSGSSQDNDDGSDISLKLG |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
flower development |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
cell differentiation |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
nucleic acid binding |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
translation regulator activity |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
translation |
|
| 12 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
