LOC_Os06g10990

Expression Profile

RGAP LOCUS ID LOC_Os06g10990
RAP-DB ID Os06g0212900
Function DnaK family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Mitochondrial
score 1.078

3) NUCPRED Prediction
localization Non Nuclear
score 0.03

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.77
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) S5(ORF3)
Function assigned as per literature ORF3 regulates fertility in indica-japonica hybrids
Subcellular localization as per literature ER and Nucleus
Cells used for localization experiment (N. benthamiana) mesophyll protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 27182946
Reference of localization http://www.genetics.org/content/203/3/1439.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.47
Protein Sequence >LOC_Os06g10990.1 protein
MGRRRLLLSDLLLLLLIAIAVAGAAAAIAIPRAAPAFGVETGWPPEHCLRCFAPPDAPFVLGAAAAIHLGNTNSCIAGYDDDDAPLGAKRSYYQFCIPSW
VALAHDNGTVISGEAAMNRAALSPSTAVSAFMRLLHRRVEDDVVKREIELVPYKFTKMLGWVSVQLDTDAEFSVDHLAGILISHLKHTAEAHLGRHINNA
VITLPSRLSYSADGRQVLSSAAKEYSGFRAVKVVDEHIAAAAAYGHHTKQGDRKAILVFHLGGRTSHATIFKFVDGTARLIATRAHHFLGGDDFTARIVD
HMVEHIKEQHGRDVRQEEKAMVRLRVACEHAKKALSEQQETLVQMDSLLDDGAVFSATLTRAKFEELNHDLLDRAMALVKEVVVTTGGVEVVDEVLVVGG
SARIPKVRQLVKDYFNGNGNGTHPNSRGCKGPVDVEPEDAVLHGAALLSRPLPVAEGTAAARSIGSVGGI

GO Analysis
1
GO Category Biological Process
GO Term protein metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Cellular comBiological Processonent
GO Term cellular_component
6
GO Category Biological Process
GO Term catabolic process
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term response to abiotic stimulus
9
GO Category Cellular comBiological Processonent
GO Term vacuole
10
GO Category Cellular comBiological Processonent
GO Term membrane
11
GO Category Cellular comBiological Processonent
GO Term cell wall
12
GO Category Cellular comBiological Processonent
GO Term cytosol
13
GO Category Biological Process
GO Term cellular component organization
14
GO Category Biological Process
GO Term cell differentiation
15
GO Category Biological Process
GO Term multicellular organismal development
16
GO Category Cellular comBiological Processonent
GO Term plasma membrane
17
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No