LOC_Os06g10660

Expression Profile

RGAP LOCUS ID LOC_Os06g10660
RAP-DB ID Os06g0208800
Function lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization E.R.
score 5.5

2) CELLO Prediction
localization Extracellular
score 3.073

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.96
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LYP6|OsLYP6
Function assigned as per literature LYP6 and LYP4 are promiscuous PRRs for PGN and chitin in rice innate immunity
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment rice protoplast cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22872757
Reference of localization http://www.plantcell.org/content/24/8/3406.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.037
NLS score -0.47
Protein Sequence >LOC_Os06g10660.1 protein
MAGWPAAEAAGALVVAILAAAAGGAAGKTTIEPCAGADTCAALLGYTLYADMKVSEVAALFGADPRAVLAANALDFASPGAANRILPAGLPLRVPTRCAC
SDGVRKSVAVRYSARPADTLASVADVVFAGLASADQIRTANGLSAEDPDAPLDAGATLVVPLPCACFNSTDNNLPAVYLSYVVRVGDTVQSIAATHATTV
TDISNVNAMGSPIVAPGDILAIPLPACASMFPNSASDYGLLVANGTYALTAGNCVQCSCGPGDLKLYCTPASLTASCSSMQCPNSNLMLGNVTAQSTSGG
CNVSSCSYAGLVNGTIATSLSSGLQPTCPGPHQFPPLRATPIAVNQGSYLAPSPAPGAGEAGGDIPGFPGSSNVSPANGPSGSVSQAASVNRPHQIVALI
LSVALYFQM

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term catabolic process
3
GO Category Cellular comBiological Processonent
GO Term plasma membrane
4
GO Category Cellular comBiological Processonent
GO Term membrane
Presence of Splice variants No