LOC_Os06g10580

Expression Profile

RGAP LOCUS ID

LOC_Os06g10580

RAP-DB ID

Os06g0207700

Function

cyclic nucleotide-gated ion channel, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

plas

score

2) CELLO Prediction

localization

PlasmaMembrane

score

4.169

3) NUCPRED Prediction

localization

Non Nuclear

score

0.59

4) Y-Loc Prediction

localization

Nuclear

score

79.7

confidence value

0.43

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsCNGC13

Function assigned as per literature

OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues

Subcellular localization as per literature

Plasma membrane

Cells used for localization experiment

Rice protoplasts

NUCLEAR or Not Nuclear

NOT NUCLEAR

PMID

28708858

Reference of localization

http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006906

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.125

NLS score

0.1

Protein Sequence

>LOC_Os06g10580.1 protein
MSGQERDDVPMLELQRFPTRSVSMCIPVRDDIYEDSIISHSGPIFTPAPTQYTSVAIPSGNRDMLDKLPRPKVKSKPHVVTPEEVGISNWPYDQHVPKNK
HLMMYSEPLGLCDNPDCVDCPRACKNKRHFQRSLAPFDNKFHNILYGYGDRWKKKAGHYLSYIPIMKPHDKAVHRWNQFFVISCLLAIFNDPLFFFLLSV
DKDYKCIVFNWNFAIALAVGRSVTDAIYFLHMLLQFRLAYVAPESRVVGTGDLVDEPMKIAMRYLRGFFVLDLFVVLPLPQVMILLVIPKYVGLSSANYA
KNLLRATVLLQYVPRIIRFVPLLGGQSTNGFIFESAWSTFVINLLMFVLAGHVVGSCWYLFGLQRVNQCLRDSCAASNISKALCNNCTDCGITGINRTNW
LNNSDLTGCFDTKSGNFPYGIYQQAVLLTTEPGLKRYIYSLFWGFQQISTLAGNLIPSYFVWEVIFTMAIIGLGLLLFALLIGSMQNFLQALGKRRLEMQ
LRRRDVEQWMSHRRLPEDLRRRVRSAERFSWVATRGVNEEELLSNLPEDIQRGIRRHFFGFLKKVRLFNLMDNATWDAICDKLRQNLYITGSDILYQGGP
VEKMVFIVRGRLESISADGNKSPLQEGDVCGEELLSWYLEQSSVNRDGGKIKLHGMRLVAIRTVRCLTNVEAFVLRARDLEEVTSQFSRFLRNPLVLGTI
RYESPYWKNLAANRIQVAWRYRKRRLKRAEMQRLQ

GO Analysis

GO Category	Cellular comBiological Processonent
GO Term	membrane

GO Category	Molecular Function
GO Term	nucleotide binding

GO Category	Molecular Function
GO Term	transporter activity

GO Category	Biological Process
GO Term	transport

GO Category	Biological Process
GO Term	cellular process

GO Category	Biological Process
GO Term	response to biotic stimulus

GO Category	Molecular Function
GO Term	protein binding

GO Category	Cellular comBiological Processonent
GO Term	plastid

Presence of Splice variants

YES