| RGAP LOCUS ID |
LOC_Os06g09910 |
| RAP-DB ID |
Os06g0199500 |
| Function |
phosphopantothenoylcysteine decarboxylase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
6 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
1.607 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.19 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
5 |
| confidence value |
0.15 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsHAL3 |
| Function assigned as per literature |
OsHAL3 plays an important role in photoperiodic control of flowering time in rice |
| Subcellular localization as per literature |
Nucleus and cytoplasm |
| Cells used for localization experiment |
Tobacco leaf epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
26537047 |
| Reference of localization |
https://www.cell.com/action/showPdf?pii=S1674-2052%2815%2900424-4 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.095 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os06g09910.1 protein
MTTSESVQETLGLDFPHPSKPRVLLAASGSVAAIKFESLCRSFSEWAEVRAVATKASLHFIDRTSLPSNIILYTDDDEWSTWKKIGDEVLHIELRKWADI
MVIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTSRHLETINLLGISLVPPITKRLACGDYGNGAMAEPSVIDSTVRLACKR
QPLNTNSSPVVPAGRNLPSS |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| Presence of Splice variants |
YES |
