LOC_Os06g09630

Expression Profile

RGAP LOCUS ID LOC_Os06g09630
RAP-DB ID Os06g0196600
Function 3-oxoacyl-synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Chloroplast
score 3.699

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.63
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsKASI
Function assigned as per literature OsKASI  has role in FA synthesis is required for root development in rice
Subcellular localization as per literature plastid
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25893869
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-015-2296-2
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 3
Number of Bipartite 0
Basic residues % 0.099
NLS score 0.98
Protein Sequence >LOC_Os06g09630.1 protein
MQSLLLPTFAAASAAPPRRGRVPPAGRASVSVRASASAAAVAPRRETDPRKRVVITGMGLVSVFGNDVDAYYDRLLAGESGIGPIDRFDASNFPTRFAGQ
IRGFSSEGYIDGKNDRRLDDCLRYCIVSGKKALESAGLALGSKSMDKIEKTRAGVLVGTGMGGLTVFSDGVQNLIEKGHRKITPFFIPYAITNMGSALLG
MDIGFMGPNYSISTACATSNYCFYAAANHIRRGEADVMIAGGTEAAIIPIGVGGFVACRALSQRNDDPKTASRPWDQDRDGFVMGEGAGVLVMESLEHAM
KRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGVAPEEVNYINAHATSTLAGDLAEVNAIRQVFKDPSEIKINATKSMIGHCLGAAGGL
EAIATVKAITTGWVHPSINQFNPEPAVEFDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPFKP

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term catalytic activity
4
GO Category Biological Process
GO Term embryo development
5
GO Category Molecular Function
GO Term transferase activity
6
GO Category Cellular comBiological Processonent
GO Term plastid
7
GO Category Biological Process
GO Term cellular component organization
8
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No