LOC_Os06g09370

Expression Profile

RGAP LOCUS ID

LOC_Os06g09370

RAP-DB ID

Os06g0193400

Function

PTF1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

3.169

3) NUCPRED Prediction

localization

Non Nuclear

score

0.41

4) Y-Loc Prediction

localization

Nuclear

score

99.96

confidence value

0.67

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

bHLH

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsPTF1

Function assigned as per literature

Role in tolerance to phosphate starvation

Subcellular localization as per literature

Nucleus

Cells used for localization experiment

Rice root cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

16006597

Reference of localization

http://www.plantphysiol.org/content/plantphysiol/early/2005/07/08/pp.105.063115.full.pdf

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.067

NLS score

0.28

Protein Sequence

>LOC_Os06g09370.2 protein
MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSLKITENERNPTMLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSS
NLRSNSIPPGVLQCNSTSGTFDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAMLNKTSLP
NGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVLQALGAGGLKAAQQEQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHSSDVEP
QANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTEC
HSNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK

GO Analysis

GO Category	Molecular Function
GO Term	DNA binding

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

GO Category	Biological Process
GO Term	anatomical structure morphogenesis

GO Category	Biological Process
GO Term	cell differentiation

GO Category	Biological Process
GO Term	multicellular organismal development

Presence of Splice variants

YES