LOC_Os06g08790

Expression Profile

RGAP LOCUS ID LOC_Os06g08790
RAP-DB ID Os06g0187000
Function ORC1 - Putative origin recognition complex subunit 1, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 7

2) CELLO Prediction
localization Nuclear
score 3.152

3) NUCPRED Prediction
localization Nuclear
score 0.91

4) Y-Loc Prediction
localization Nuclear
score 68.2
confidence value 0.1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category PHD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsORC1
Function assigned as per literature OsORC1 is required for cell proliferation
Subcellular localization as per literature Nucleus
Cells used for localization experiment Suspension-cultured tobacco BY2-cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 15939553
Reference of localization https://www.sciencedirect.com/science/article/pii/S037811190500185X
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 8
Number of PAT7 7
Number of Bipartite 1
Basic residues % 0.156
NLS score 5.02
Protein Sequence >LOC_Os06g08790.1 protein
MDLSATPSRSKSGLRSSPRKPVAAPAVAQMDLSTPSKPTPRRKPKAPPVAAPMSPVTPSSVRRSSRLLETPTKVTSETPVKPTPTPKRKRAAPSPSPKTP
TQSEPKRQRQRQRQRQQPKKPKKRAYYRKVVYDGGEFAAGDDVYVKRRDGAESDAEDPEAEECRVCFRAGAAVMVECDVCLGGFHLRCVRPPLRRVPEGD
WACPYCEAERAGKAIERPKPPEGKRIVRTAKEKLLSSDLWAARIESLWREPDGIFWAKVRWYIIPEETAAGRQPHNLRRELYRTNDLADIEMETILRHCY
VMSPKEFKDASDQGDDVFYCEYEYDIHWHNFKRLADIDDEPETKEDPGDEPYNAGNDYVSDSDEDSEYDEEEEPTKCSSARTHQSHALAANLRKGRTYGL
QKIGIRKIPEHVRCHQKTNLEKAKATLLLATLPKSLPCRDKEMEEISAFVKDAICNDQCLGRCLYIHGVPGTGKTMSVLAVMRRLRSELDSGNLRPYSFI
EINGLKLASPENIYKVIYEQLSGHRVGWKKALHYLTEHFSGGTKIGKQANQPIILLIDELDLLLTRNQSVLYNILDWPTRPNSNLVVIGIANTMDLPEKL
LPRISSRMGIQRLCFGPYNYRQLQEIITSRLKGIDAFEDQAIEFASRKVAAMSGDARRALEICRRAAEFADYRVKQSGHTSVNRGKNVVCMGDIEAAIQE
VFQAPHIQVMKNCPKFGKIILVAMVHELYRSGLGEVMFDKLAATVLSWCHVNRELLPGYDTLLKICCKLGEGKIILCEEGTKHKLQKLQLNYPSDDVTFA
LKESPDIPWLSKYL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Biological Process
GO Term DNA metabolic process
8
GO Category Biological Process
GO Term reproduction
Presence of Splice variants No