LOC_Os06g08440

Expression Profile

RGAP LOCUS ID LOC_Os06g08440
RAP-DB ID Os06g0183100
Function two-component response regulator, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 4.148

3) NUCPRED Prediction
localization Nuclear
score 0.9

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.91
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category ARR-B

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRR22|HST1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.099
NLS score 0.09
Protein Sequence >LOC_Os06g08440.1 protein
MLLGALRMEERKGLMGRERDQFPVGMRVLAVDDDPVCLKVLETLLRRCQYHVTSTNQAITALKLLRENRDMFDLVISDVHMPDMDGFKLLELVGLEMDLP
VIMLSVNGETKTVMKGITHGACDYLLKPVRIEELRNIWQHVVRRKFGNRERNNLDFSKECNKPQSADTDHGPYQPTCGSSDQNGRSSRKRKELHGEDDDE
GDDNDYQENDEPSAAKKPRVVWSVELHRKFVAAVNQLGIDKAVPKRILELMNVEKLTRENVASHLQKYRLYLKRLGAVASQQASIVAAFGGRDPSFLHIG
AFEGLQSYQPFAPSAALPSFNPHGLLTRTSAAAAFGLQELAAPSSTIQTSTGNVTVGHCLEENQQANLAQGLTAAIGQPQLQQNWIHQEGNGLSDVFSGS
SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIPPSSSALLERTLGVSTNLGDSSISQQGALPIDGGFSADRLPLHSSFDGAVATKLDTSLAAS
QREIGQQGKFSVSMLVSPSDNLALAKNAKTGASSSGSTIILPLDTARHSDYLQFGGASNSLQKMDGQKQDHIQSSNIIWSSMPSTQLPSDTQIHNTQNQR
LDSGSFNHNIGAHLADQTNASASILPQMKFDTRISEEKMKQKNTYDLGSSKLQGGFNSSGCNFDGLLNSIIKVEKDDLPFMDNELGCDLFPLGACI

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term secondary metabolic process
7
GO Category Biological Process
GO Term signal transduction
8
GO Category Biological Process
GO Term response to endogenous stimulus
9
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
10
GO Category Molecular Function
GO Term signal transducer activity
Presence of Splice variants No