LOC_Os06g08400
| RGAP LOCUS ID | LOC_Os06g08400 | ||||
| RAP-DB ID | Os06g0182500 | ||||
| Function | LIM domain-containing protein, putative, expressed | ||||
Sub-cellular Localization Predictions |
|||||
1) WoLF-PSORT Prediction |
|||||
| localization | Nuclear | ||||
| score | 12 | ||||
2) CELLO Prediction |
|||||
| localization | Nuclear | ||||
| score | 3.01 | ||||
3) NUCPRED Prediction |
|||||
| localization | Non Nuclear | ||||
| score | 0.46 | ||||
4) Y-Loc Prediction |
|||||
| localization | Nuclear | ||||
| score | 66.13 | ||||
| confidence value | 0.65 | ||||
| Number Of Software Predicting Nucleus | 3 | ||||
| Seed Specific | No | ||||
| Transcription factor category | Orphans | ||||
Experimental evidence for subcellular localization |
|||||
| Published gene name (updated 1 January 2020) | OsDA1 | ||||
| Function assigned as per literature | |||||
| Subcellular localization as per literature | NA | ||||
| Cells used for localization experiment | |||||
| NUCLEAR or Not Nuclear | |||||
| PMID | |||||
| Reference of localization | |||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
|||||
| Number of PAT4 | 1 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.111 | ||||
| NLS score | -0.22 | ||||
| Protein Sequence | >LOC_Os06g08400.1 protein MGWLTKFFRGSTHKISEGQYHSKPAEETIWNGPSNSAVVTDVPSEFDNEDIARAISLSLLEEEQRKAKAIEKDMHLEEDEQLARAIQESLNVESPPRARE NGNANGGNMYQPLPFMFSSGFRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPKCDVCKQFIPTNMNGLIE YRAHPFWLQKYCPSHEVDGTPRCCSCERMEPRESRYVLLDDGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK TGHHHLPETRGLCLSEEQTVSTILRRPRMAGNKVMEMITEPYRLTRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSPDVEEGICQVLAHM WIESEIIAGSGSNGASTSSSSSASTSSKKGGRSQFERKLGDFFKHQIESDTSMAYGDGFRAGNRAVLQYGLKRTLEHIRLTGTFPF |
||||
GO Analysis |
|||||
| 1 |
|
||||
| 2 |
|
||||
| Presence of Splice variants | YES | ||||