LOC_Os06g07540

Expression Profile

RGAP LOCUS ID LOC_Os06g07540
RAP-DB ID Os06g0171900
Function WD-40 repeat family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 5

2) CELLO Prediction
localization Nuclear
score 2.241

3) NUCPRED Prediction
localization Non Nuclear
score 0.19

4) Y-Loc Prediction
localization Nuclear
score 97.81
confidence value 0.89
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SRWD3
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.101
NLS score -0.47
Protein Sequence >LOC_Os06g07540.1 protein
MAAAVRDGAAVAGYMAEDDPDGAASEDGDMDVEVGGEESQARDGDRRDGGDGDDEYALLTRITDTSAAEARAGKDIQGIPWERLQITRSDYRKARLVQYK
NYENFPQSGELMDKICKQVDKISKYYEFHYNTRLVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDFSGHVAPAQKHPGSLLEGFSG
VQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTLSDNAITNAIDIHRSASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRK
LLAVVGDDRDALLVDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRNLSTSLSVLRGNIGAIRCIRYSSDGQFMLFSEPADFVHVYS
AAADYKKRQEIDFFGEISGISLSPDDESLFVGVCDRVYASLLHYRMVHSFGYLDSFM

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Cellular comBiological Processonent
GO Term plasma membrane
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES