LOC_Os06g06530

Expression Profile

RGAP LOCUS ID LOC_Os06g06530
RAP-DB ID Os06g0160400
Function proline-rich cell wall protein-like, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4

2) CELLO Prediction
localization Nuclear
score 2.618

3) NUCPRED Prediction
localization Non Nuclear
score 0.08

4) Y-Loc Prediction
localization Nuclear
score 79.87
confidence value 0.13
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) HGW
Function assigned as per literature HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight
Subcellular localization as per literature Cytosol and nucleus
Cells used for localization experiment Tobacco leaf and onion epidermal cells and rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 22457828
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034231
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.082
NLS score -0.47
Protein Sequence >LOC_Os06g06530.1 protein
MDYDYRGRPGSGSYGGGVGGGGGSSSLYPRVGQPSHGVANAPPPEPPRAAPYHHHGPPTVSAAPHPVPASSSTSMGIQVVIKPAYRITPPPQLPPQLTEI
PRSTFNFDFEYERKILAEAEKENPNWSKFVIESQPPPPPQPPRGPKLTTPTTSVATPGDPVVDKYISMGLGREAVSFAVLNYGDNPAKVKEFVKSYNALH
EMGFTSSNVPELLAIHDNDPDKVIQHLIGTS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No