LOC_Os06g06260

Expression Profile

RGAP LOCUS ID LOC_Os06g06260
RAP-DB ID Os06g0156700
Function GDSL-like lipase/acylhydrolase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization E.R.
score 4

2) CELLO Prediction
localization PlasmaMembrane
score 3.047

3) NUCPRED Prediction
localization Non Nuclear
score 0.09

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.35
Number Of Software Predicting Nucleus 0
Seed Specific Yes
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGLIP2
Function assigned as per literature OsGLIP2 negatively regulates rice defense by modulating lipid metabolism
Subcellular localization as per literature Lipid bodies (cytoplasm) and endoplasmic reticulum
Cells used for localization experiment Root cells of transgenic plants
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29131851
Reference of localization https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1006724
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.077
NLS score -0.47
Protein Sequence >LOC_Os06g06260.1 protein
MARRGGALAAAAVDVVGSVLVVCCLCWCAVQPALAGGVGGGGGDGGMRCKYNAMFVFGDSLADTGNICVNKSAAATLLLTFAQPPYGMTYFGHPTCRCSD
GRLVVDFLAQELGLPLLPPSKRSAGGGDFRRGANMAIVGATALDFDFLKSIGLGYPIWNNGAMNVQLQWFHHLLPSICATQPQGCRAYLSKSLFLFGSLG
GNDYNAMLFFGFTVDQARNYTPKIVDTIITGVEKLIAMGAAEIVVPGVMPVGCFPLYLTMLRSSNESDYDEHGCLRPLNDLAIHHNALLQARLAGLQARY
RSAAAAAPAPVRIMYADYYTMVAQMLHTPARFGFRSGMTACCGAGGGEYNYEFEARCGMKGAAACRDPSRHVCWDGVHTTEAANRLVAGGWLRGPYCHPP
ILHH

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term hydrolase activity
3
GO Category Biological Process
GO Term lipid metabolic process
4
GO Category Cellular comBiological Processonent
GO Term vacuole
Presence of Splice variants No