LOC_Os06g06090

Expression Profile

RGAP LOCUS ID LOC_Os06g06090
RAP-DB ID Os06g0154500
Function CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Cytoplasmic
score 2.845

3) NUCPRED Prediction
localization Non Nuclear
score 0.28

4) Y-Loc Prediction
localization Cytoplasm
score 75
confidence value 0.47
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMPK1|OsMAPK6|OsSIPK
Function assigned as per literature OsMAPK6 influences rice grain size in rice, via cell proliferation and biomass production
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Rice Oc protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 26366992
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.13025
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.093
NLS score -0.47
Protein Sequence >LOC_Os06g06090.1 protein
MDAGAQPPDTEMAEAGGGQQPPAAAAAAGAGAGAGMMENIQATLSHGGRFIQYNIFGNVFEVTAKYKPPILPIGKGAYGIVCSALNSETGEQVAIKKIAN
AFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQRNSFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLL
LNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNSSEYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPNEADLDFVNENAR
RYIRQLPRHARQSFPEKFPHVHPLAIDLVEKMLTFDPRQRITVEGALAHPYLASLHDISDEPVCSSPFSFDFEQHALSEEQMKDLIYQEGLAFNPDYQ

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Biological Process
GO Term response to biotic stimulus
7
GO Category Biological Process
GO Term response to endogenous stimulus
8
GO Category Biological Process
GO Term flower development
9
GO Category Cellular comBiological Processonent
GO Term cytoplasm
10
GO Category Molecular Function
GO Term protein binding
11
GO Category Molecular Function
GO Term kinase activity
12
GO Category Molecular Function
GO Term signal transducer activity
13
GO Category Biological Process
GO Term biosynthetic process
14
GO Category Biological Process
GO Term secondary metabolic process
15
GO Category Biological Process
GO Term signal transduction
16
GO Category Biological Process
GO Term protein modification process
17
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
18
GO Category Biological Process
GO Term post-embryonic development
19
GO Category Cellular comBiological Processonent
GO Term cytoskeleton
Presence of Splice variants YES