| RGAP LOCUS ID |
LOC_Os06g06050 |
| RAP-DB ID |
Os06g0154200 |
| Function |
OsFBL27 - F-box domain and LRR containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
E.R. |
| score |
3.5 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
1.152 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.34 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
71.87 |
| confidence value |
0.26 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
D3 |
| Function assigned as per literature |
D3 participates in an SCF complex and associates with D14 to suppress rice shoot branching |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice leaf protoplast |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
24616269 |
| Reference of localization |
https://academic.oup.com/pcp/article/55/6/1096/2756410 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.09 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os06g06050.1 protein
MAEEEEVEEGRSSSSAILDLPEPLLLHILSFLTDVRSRHRAALACGRMRAAERATRSELSLRGDPRSPGFLFLSHAFRFPALEHLDLSLVSPWGHPLLSS
VPPCGGGGGGAPSASSSSGMNVYHPEAISEQNAFIAARLAGCFPAVTSLAVYCRDPTTLANLTPHWQASLRRVKLVRWHQRPPTLPDGADLEPLLETCAA
LRELDLSEFYCWTEDVVRALTTHPSATAALTHLDLGLAAATDGFKSSELGPIAASCPNLRKLVAPCLFNPRFSDCVGDDALLSLATSCPRLTVLRLSEPF
EAAANIQREEAAITVAGLVAFFAALPALEDFTMDLQHNVLEAAPAMEALARRCPRIKFLTLGSFQGLCKASWLHLDGVAVCGGLESLYMKNCQDLTDASL
AAIGRGCRRLAKFGIHGCDLVTSAGIRRLAFTLRPTLKEVTVLHCRLLHTAECLTALSPIRDRIESLEINCVWNTTEQPCSVANGTTTECDPEDDELGEV
YESAAKKCRYMEFDDLGSWEMLRSLSLWFSAGQLLSPLISAGLDSCPVLEEISIKVEGDCRTCPRPAPRTIFGLSDLAGFPVLAKMKLDLSEAVGYALTA
PTGQMDLSLWERFYLHGIESLQTLYELDYWPPQDKDVHHRSLTLPAVGLIQRCVGLRKLFIHGTTHEHFMTFFLSIPNLRDMQLREDYYPAPENDLMFTE
MRAESWLRFEVQLNSRQIDD |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
protein metabolic process |
|
| 12 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 13 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| Presence of Splice variants |
No |
