| RGAP LOCUS ID |
LOC_Os06g05660 |
| RAP-DB ID |
Os06g0149400 |
| Function |
NAP domain containing protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.492 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.4 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.87 |
| confidence value |
0.99 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
Orysa;NAP1;1|OsNAP1_L1 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
cytoplasm and nucleus |
| Cells used for localization experiment |
tobacco (Nicotiana tabacum) |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
15980199 |
| Reference of localization |
http://www.plantphysiol.org/content/plantphysiol/138/3/1446.full.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
5 |
| Number of PAT7 |
2 |
| Number of Bipartite |
0 |
| Basic residues % |
0.127 |
| NLS score |
1.56 |
| Protein Sequence |
>LOC_Os06g05660.1 protein
MGGDKENLDLSDLNASLPAAAAALSAEDRAGLVNALKDKLQSLAGQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTK
RYNIVNGVVEVDGGNDEPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHM
VDEDEPILEKAIGTEIEWYPGKNLTQKILKKKPKKGSKNAKPITKTEVCESFFNFFSPPQVPDDDEDIDEDTADELQGQMEHDYDIGTTIRDKIIPHAVS
WFTGEAVQAEDFDDMEDDEEDDEDDDEDEEEEEEDEDEDEDDEEEKSKPKKKSAGKPKLPSKGGAQGGADQPADCKQQ |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
DNA metabolic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| Presence of Splice variants |
YES |
