LOC_Os06g05190

Expression Profile

RGAP LOCUS ID LOC_Os06g05190
RAP-DB ID Os06g0144000
Function BRCA1 C Terminus domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.42

3) NUCPRED Prediction
localization Non Nuclear
score 0.66

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsXRCC1
Function assigned as per literature OsXRCC1 contributes to DNA repair pathways
Subcellular localization as per literature nucleus
Cells used for localization experiment onion epidermis cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 18247046
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-008-0695-3
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.147
NLS score 0.49
Protein Sequence >LOC_Os06g05190.1 protein
MPESSSDPNNGRGKSSKRNLPSWMGSKDGEENPGKKKHMATHEKVQKGSDFSKLLDGVVFVLSGFVNPERGTLRSQALDMGAEYRPDWTSDCTLLVCAFA
NTPKFRQVESNNGTIVSKDWILESHSQRKLVDIEPYLMHVGKPWRKNKELVESDEDQKKPHKEHQKQVDRSHIKTSPSAGIEAKHSDVTSKQFSPTKIKQ
WAKNDLAQTISWLESQEEKPEPNELKAIAAEGVITCLQDAIESLKQGNDVKGVAEQWSFVPHVINELAELDGRRKEGSLSKEQLSQLAIKCKKIYQAEFA
HMHDNDKKHQSKPRSDDAQYDSDDTIEMTEEEIDLACRQLPGVCGRQ

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term DNA metabolic process
3
GO Category Molecular Function
GO Term molecular_function
4
GO Category Cellular comBiological Processonent
GO Term intracellular
Presence of Splice variants No