LOC_Os06g05160

Expression Profile

RGAP LOCUS ID LOC_Os06g05160
RAP-DB ID Os06g0143700
Function sulfate transporter, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 6

2) CELLO Prediction
localization PlasmaMembrane
score 4.9

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.37
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SPDT
Function assigned as per literature SPDT functions in the rice node as a switch to allocate phosphorus preferentially to the grains
Subcellular localization as per literature plasma membran
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28002408
Reference of localization https://www.nature.com/articles/nature20610
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.079
NLS score -0.47
Protein Sequence >LOC_Os06g05160.1 protein
MVVNNKVDSLSYDVEAPPAQAPTTPAVVSAPPTPRGEAPAMTTTAAAELHKVSVPERRSTAKALRQRLAEVFFPDDPLHQFKNQSSARRLVLALQYFFPI
FHWGSDYSLRLLRSDVVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSLLGSSRDLAVGPVSIASLVMGSMLRQAVSPDQEPILYLQLAFTS
TFFAGVFQASLGFLRLGFIVDFLSKATLTGFMGGAAIIVSLQQLKGLLGIIHFTSQMGFVQVMHSVFKHHDEWAWQTILMGVAFLAVLLTTRHISARNPK
LFWVSAAAPLTSVIISTIISFVSKAHGISVIGDLPKGLNPPSANMLTFSGSYVGLALNTGIMTGILSLTEGIAVGRTFASINNYQVDGNKEMMAIGVMNM
AGSCASCYVTTGSFSRSAVNYSAGCKTAVSNIVMASAVLVTLLFLMPLFHYTPNVILSAIIITAVIGLIDVRGAARLWKVDKLDFLACMAAFLGVLLVSV
QMGLAIAVGISLFKILLQVTRPNMVVKGVVPGTASYRSMAQYREAMRVPSFLVVGVESAIYFANSMYLGERIMRFLREEDERAAKCNQCPVRCIILDMSA
VAAIDTSGLDALAELKKVLEKRNIELVLANPVGSVTERLYNSVVGKTFGSDRVFFSVAEAVAAAPHKTQP

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term cellular_component
4
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No