LOC_Os06g05060

Expression Profile

RGAP LOCUS ID LOC_Os06g05060
RAP-DB ID Os06g0142600
Function ELF3 protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.61

3) NUCPRED Prediction
localization Nuclear
score 0.93

4) Y-Loc Prediction
localization Nuclear
score 97.72
confidence value 0.32
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Hd17|Ef7|OsELF3-1|OsELF3.1|OsELF3
Function assigned as per literature OsELF3 acts as a floral activator in the long-day photoperiodic pathway via its crosstalk with the circadian clock in rice
Subcellular localization as per literature OsELF3 colocalized with GHD7 in nucleus
Cells used for localization experiment protoplast of Arabidopsis
NUCLEAR or Not Nuclear NUCLEAR
PMID 22888152
Reference of localization https://www.sciencedirect.com/science/article/pii/S1674205214608911?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.111
NLS score -0.16
Protein Sequence >LOC_Os06g05060.1 protein
MATRGGGGGGGGKEAKGKVMGPLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFSGGGGGGGVGGSPAHSTSAASQSQSQSQVYGRDSSLFQPFN
VPSNRPGHSTEKINSDKINKKISGSRKELGMLSSQTKGMDIYASRSTAEAPQRRAENTIKSSSGKRLADDDEFMVPSVFNSRFPQYSTQENAGVQDQSTP
LVAANPHKSPSTVSKSSTKCYNTVSKKLERIHVSDVKSRTPLKDKEMEAAQTSKNVEVEKSSSFHASKDMFESRHAKVYPKMDKTGIINDSDEPHGGNSG
HQATSRNGGSMKFQNPPMRRNEISSNPSSENTDRHYNLPQGGIEETGTKRKRLLEQHDAEKSDDVSRLLEQHDAENIDDVSDSSVECITGWEISPDKIVG
AIGTKHFWKARRAIMNQQRVFAVQVFELHKLVKVQKLIAASPHVLIESDPCLGNALLGSKNKLVEENLKAQPLLVATIDDVEPSLQQPEVSKENTEDSPP
SPHDTGLGSGQRDQAATNGVSKSNRRATPVASDNKQNNWGVQLQPPQNQWLVPVMSPLEGLVYKPYSGPCPPAGSILAPFYANCTPLSLPSTAGDFMNSA
YGVPMPHQPQHMGAPGPPSMPMNYFPPFSIPVMNPTAPAPVVEQGRHPSMPQPYGNFEQQSWISCNMSHPSGIWRFHASRDSEAQASSASSPFDRFQCSG
SGPVSAFPTVSAQNNQPQPSYSSRDNQTNVIKVVPHNSRTASESAARIFRSIQMERQRDD

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Biological Process
GO Term cellular component organization
4
GO Category Biological Process
GO Term anatomical structure morphogenesis
5
GO Category Biological Process
GO Term cell growth
6
GO Category Cellular comBiological Processonent
GO Term nucleus
7
GO Category Biological Process
GO Term biosynthetic process
8
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
9
GO Category Biological Process
GO Term response to stress
10
GO Category Biological Process
GO Term response to abiotic stimulus
11
GO Category Biological Process
GO Term flower development
12
GO Category Biological Process
GO Term response to external stimulus
13
GO Category Biological Process
GO Term reproduction
14
GO Category Biological Process
GO Term post-embryonic development
15
GO Category Biological Process
GO Term signal transduction
16
GO Category Molecular Function
GO Term protein binding
17
GO Category Biological Process
GO Term cellular process
18
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No