LOC_Os06g04540

Expression Profile

RGAP LOCUS ID LOC_Os06g04540
RAP-DB ID Os06g0136900
Function DNA binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5

2) CELLO Prediction
localization Nuclear
score 2.543

3) NUCPRED Prediction
localization Non Nuclear
score 0.26

4) Y-Loc Prediction
localization Nuclear
score 99.71
confidence value 0.66
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DP1
Function assigned as per literature DP1 functionas as a regulator of rice flower development, possibly via chromatin architecture control
Subcellular localization as per literature Nucleus
Cells used for localization experiment Tobacco leaf epidermis and transgenic rice root tip
NUCLEAR or Not Nuclear NUCLEAR
PMID 21924254
Reference of localization https://www.sciencedirect.com/science/article/pii/S0012160611012231?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.055
NLS score -0.22
Protein Sequence >LOC_Os06g04540.1 protein
MDPVTAAAAHGGGHHHHHHFGAPPVAAFHHHPFHHGGGAHYPAAFQQFQEEQQQLVAAAAAAGGMAKQELVDESNNTINSGGSNGSGGEEQRQQSGEEQH
QQGAAAPVVIRRPRGRPAGSKNKPKPPVIITRDSASALRAHVLEVASGCDLVDSVATFARRRQVGVCVLSATGAVTNVSVRQPGAGPGAVVNLTGRFDIL
SLSGSFLPPPAPPSATGLTVYVSGGQGQVVGGTVAGPLIAVGPVVIMAASFGNAAYERLPLEDDEPPQHMAGGGQSSPPPPPLPLPPHQQPILQDHLPHN
LMNGIHLPGDAAYGWTSGGGGGGRAAPY

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No