LOC_Os06g04500

Expression Profile

RGAP LOCUS ID LOC_Os06g04500
RAP-DB ID Os06g0136500
Function cornichon protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 4.846

3) NUCPRED Prediction
localization Non Nuclear
score 0.25

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.75
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCNIH1
Function assigned as per literature OsCNIH1 interacts with OsHKT1;3 and enables the expression of the sodium transporter to the Golgi apparatus
Subcellular localization as per literature OsCNIH1 Iis colocalized withOsHKT1;3 in plasma membrane
Cells used for localization experiment tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25750424
Reference of localization https://academic.oup.com/jxb/article/66/9/2733/679229
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.074
NLS score -0.16
Protein Sequence >LOC_Os06g04500.1 protein
MVFVWLTAFFLVVALIVLVIYQLMCLADLEFDYINPFDSSSRINKVVIPEFVLQAALSVLFLLSGHWAMFLLSAPMVYYNYTLYQRRQHLVDVTEIFNHL
GREKKRRLFKIVGLIILLFLSLFWMIWTVLLEEDE

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Molecular Function
GO Term molecular_function
3
GO Category Cellular comBiological Processonent
GO Term membrane
4
GO Category Biological Process
GO Term signal transduction
Presence of Splice variants YES