LOC_Os06g04190

Expression Profile

RGAP LOCUS ID LOC_Os06g04190
RAP-DB ID Os06g0132600
Function rad1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 4

2) CELLO Prediction
localization Nuclear
score 1.801

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Nuclear
score 74.01
confidence value 0.62
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRAD1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.095
NLS score -0.47
Protein Sequence >LOC_Os06g04190.1 protein
MSSSTSARDDEAPDLVCQIDCVHGMVDALSCVRWKRHQDAVLELSEHGIVLIVEESGCLQAKVYLKRELFMEYEYAAEGRPRFGLSLGLLVDCLNTFSAP
GHSSPVEIRYPGPDMQLLLKSVGSPDSCMYAEIRTRIPDTISWDYHFEHAGNTPVTFTVKSAVLKESIEDLEWPGSSIQIQMQPDPPSVLFKGEGHGDLQ
IEFPYYANTDLLIAFQCDHETSYRYKYKFLRATTSNFPNSIVKENRGSKVTIGRGGMLKIQHLVSVARPGMQNFRNVAGGAQQPSRIAYIEFFVKPEEYE
INDA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term DNA metabolic process
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Molecular Function
GO Term nuclease activity
Presence of Splice variants YES