LOC_Os06g04150

Expression Profile

RGAP LOCUS ID LOC_Os06g04150
RAP-DB ID Os06g0132400
Function magnesium-protoporphyrin O-methyltransferase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10

2) CELLO Prediction
localization Chloroplast
score 2.279

3) NUCPRED Prediction
localization Non Nuclear
score 0.59

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.75
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) YGL18
Function assigned as per literature YGL18 plays essential roles in light-related chlorophyll synthesis and light intensity-involved plant growth
Subcellular localization as per literature chloroplasts
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29033966
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.01694/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.12
NLS score 0.27
Protein Sequence >LOC_Os06g04150.1 protein
MARAAVSTAPLSRVHSPPPLIPRHPHSHSRVGLLHPQRKALTTAAALPPAADLPPLSLPAAAAAAAALAAAVSLSDPERRRRAQAEAAGGGDKEAVRAYF
NSTGFERWRKIYGSATDGVNRVQLDIREGHARTVAATLSMLRDSPVPLAGATVCDAGCGTGSLAIPLASQGASVLASDISAAMVSEAQRQAEAAAMAASD
TFRMPRFEVRDLESLEGKYDIVVCLDVLIHYPREEAKQMIRHLASLAEKRVLISFAPRTLYFDFLKRVGELFPGPSKATRAYLHSERDIEDALRDAGWRV
ANRGFISTQFYFAKLFEAVPIAAASQ

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term plastid
3
GO Category Cellular comBiological Processonent
GO Term thylakoid
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Biological Process
GO Term cellular process
6
GO Category Molecular Function
GO Term transferase activity
7
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants No