LOC_Os06g03990

Expression Profile

RGAP LOCUS ID LOC_Os06g03990
RAP-DB ID Os06g0130400
Function aminotransferase, classes I and II, domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization PlasmaMembrane
score 1.514

3) NUCPRED Prediction
localization Non Nuclear
score 0.55

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.1
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsACS6|SSG6
Function assigned as per literature SSG6 controls starch grain size in rice endosperm
Subcellular localization as per literature Amyloplast membrane
Cells used for localization experiment Nicotiana benthamiana leaves and stable transgenic rice plant tissues
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26792122
Reference of localization http://www.plantphysiol.org/content/170/3/1445.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 0
Number of Bipartite 3
Basic residues % 0.12
NLS score 2.2
Protein Sequence >LOC_Os06g03990.1 protein
MRRSGNGGAAKKKKKRSASAASERRPRADGGMRIVVPLQGVVQGRGGLVLGSLIPCALFYFFQLYIKRNRASPPPPPGSPTAASAAAVSPIHRSLSRGLL
APRAALPAISARGASVRDDDSLYYAGLRRCAADPYHPVTNPSGIIQLGLAENYLSLDLVGRWMEEHAAEAASMAGGEDEDERELSIRGLAAYQPYDGILA
LKMALAGFMRQIMQGSVSFEPSQVVITSGATPAMEILSFCLADPGNAFLVPSPYYPGWDRDIKWRTGIELIPVPCRSTDNFNISITALEIAYNQAKKRGI
KVRGVLISNPNNPTGSFVPKQTLHDLLEFAAEKNIHLISDEVFAGSTYGSGKFVSVAEVVDDLEDFDKGRVHIIYGLSKDLSLAGFRVGVIYSYNESIVT
AAAKIARFSSVSTPTQRLLVAMLSDQKFISDYLKVNRERLRKMYHLFVDALDQVGIECYKSSGGFYCWADMSKFIRSYSEKGERKLWDRLLEEAKVNVTP
GSSCHCIEPGWFRCCFTTLSEHDIPVLVQRLRTITDSHKPNH

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term transferase activity
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No