LOC_Os06g03940

Expression Profile

RGAP LOCUS ID LOC_Os06g03940
RAP-DB ID Os06g0130000
Function spastin, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Chloroplast
score 1.977

3) NUCPRED Prediction
localization Non Nuclear
score 0.36

4) Y-Loc Prediction
localization Cytoplasm
score 43
confidence value 0.21
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LRD6-6|LMR
Function assigned as per literature LMR is a negative regulator of cell death in rice
Subcellular localization as per literature Chloroplast
Cells used for localization experiment N. benthamiana leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25367283
Reference of localization https://link.springer.com/content/pdf/10.1007%2Fs00438-014-0944-z.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.146
NLS score -0.04
Protein Sequence >LOC_Os06g03940.1 protein
MSFLRALADSLSSLLYSAAAKGGDMDGAAAAPSPAAVVGERVAVKLRGYFELAKEEIDKAVRAEEWGLPDDAAAHYRNALRVMLEAKAARVPDAVSSSER
GQVRVYQEKIAKWQTQVEERLRVLGQRSGAAAPVPKKVVTNNPVNRNDRAASTSFHRPTSQPSPTFNRGGQASSHQKSSSGGAKPVQRAGANYDDKLVEM
INTTIVDRSPAVKWEDVAGLDKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLVRTLF
MVAVDRQPSVIFMDEIDSVMSARLANENDASRRLKSEFLIQFDGVTSNPDDLVIVIGATNKPQELDDAVLRRLVKRIYVPLPDPNVRRLLLKTQLKGQSF
KLSSHDLERLAADTEGYSGSDLRALCEEAAMMPIRELGPQNILTIKANQLRPLKYEDFKKAMTVIRPSLQKSKWDELEKWNEEFGSS

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants No