LOC_Os06g03770

Expression Profile

RGAP LOCUS ID LOC_Os06g03770
RAP-DB ID Os06g0128300
Function ABC transporter, ATP-binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 3.91

3) NUCPRED Prediction
localization Non Nuclear
score 0.09

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.89
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsATM3
Function assigned as per literature OsATM3 , mitochondrial ATM3 is essential for iron homeostasis in rice.
Subcellular localization as per literature Mitochondria
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28250070
Reference of localization http://www.plantphysiol.org/content/plantphysiol/173/4/2096.full.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.108
NLS score -0.47
Protein Sequence >LOC_Os06g03770.1 protein
MRPTSRILAAGHLLRGSRSRYDPSPVAAAAPIFRRPPTVPRPLPSPLLGGFGPNCWVYPGDGKYAPFGRLSCFMSDSTYPPPPRDVRGHAFSTSANAVAV
GKSSDDKVKKDISKKDVDDQIADTQILKNLGKYLLLNDSPDFRFRLILSLGLLVGAKVINVQVPFLFKLAVDWLAALAGAETSLASFTEANATLLALFAS
PAAVLIGYGIARSGVSACTELRNAVFSKVTLRAIRSVSSTVFSHLHELDLRYHLSRQTGALNRIIDRGSRAINYILTVMVFNVVPTILEIGMVSSILAYK
FGSTFAWITSVSVATYIAFTLAVTQWRTKFRTAMNKADNASSTVAVDSLLNYETVKYFNNEQFEVEKYDKYLKKYEDAALKTQSSLAYLNFGQNIIFSSA
LSTAMVLSSYGVMSGALTVGDLVMVNGLLFQLSLPLNFLGSVYRESRQSLIDMKSMFQLLEEKPGIKDEPHAQPLQFKGGRIEFENVHFGYVPERKILKG
ATFTVPAGKSVAIVGTSGSGKSTILRLLFRFFDSSSGSIRIDGQDIREVTLDSLRKCIGVVPQDTVLFNDTIKHNIQYGRLSATDEEVYDVARRAAIHDT
IMNFPDKYNTVVGERGLKLSGGEKQRVSIARVFLKEPSILLCDEATSALDSTTEASILNSLKTLSVDRTSIFIAHRLTTAMQCDEIIVLENGEVVEQGPH
DFLLSKGGRYAELWSQQNNSDAIDAAAVSLEVS

GO Analysis
1
GO Category Biological Process
GO Term cellular homeostasis
2
GO Category Biological Process
GO Term multicellular organismal development
3
GO Category Biological Process
GO Term growth
4
GO Category Biological Process
GO Term cellular component organization
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term biosynthetic process
7
GO Category Biological Process
GO Term protein metabolic process
8
GO Category Cellular comBiological Processonent
GO Term membrane
9
GO Category Cellular comBiological Processonent
GO Term plastid
10
GO Category Cellular comBiological Processonent
GO Term mitochondrion
11
GO Category Biological Process
GO Term transport
12
GO Category Molecular Function
GO Term hydrolase activity
13
GO Category Molecular Function
GO Term transporter activity
14
GO Category Biological Process
GO Term metabolic process
15
GO Category Biological Process
GO Term biological_process
16
GO Category Biological Process
GO Term catabolic process
17
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants No