LOC_Os06g02580

Expression Profile

RGAP LOCUS ID LOC_Os06g02580
RAP-DB ID Os06g0116400
Function high-affinity nickel-transport family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization PlasmaMembrane
score 3.765

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.13
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ZN
Function assigned as per literature ZN is required for protecting developing chloroplasts, especially during the assembly of thylakoid protein complexes, from incidental light after darkness.
Subcellular localization as per literature Chloroplast
Cells used for localization experiment transgenic Arabidopsis plants
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 20202171
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2010.04183.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.079
NLS score -0.13
Protein Sequence >LOC_Os06g02580.1 protein
MAMERLISSPLLPRRPPRAAFSRPPPSLAAAPPHHRAGGAASGYGSRPPLASLLLSRHHHHHQPPVLAANPAADVAAGEAVPPATATASRRFLQKVASAA
AATLLATIALTLIQPAWAPPALASFHSAAKAGGGIFKSELLSSAWTGFLAGCLHTLSGPDHLAALAPLSIGRSRVESAAVGALWGCGHDAGQVIFGLLFL
SLKDRLHIEVIRTWGTRVVGLTLLVIGALGIREATEVPTPCVALENGGGGGGAHRGPLDALPATRKKITFATFATGIVHGLQPDALMMVLPALALPSRVA
GAAFLGMFLVGTVVAMGSYTVLIGSCTEALKERVPRITEKLTWAASLVAISMGLGILISQSLGFSLY

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term binding
4
GO Category Molecular Function
GO Term transporter activity
5
GO Category Cellular comBiological Processonent
GO Term membrane
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No