LOC_Os06g02144

Expression Profile

RGAP LOCUS ID LOC_Os06g02144
RAP-DB ID Os06g0111500
Function 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Cytoplasmic
score 1.429

3) NUCPRED Prediction
localization Non Nuclear
score 0.03

4) Y-Loc Prediction
localization Cytoplasm
score 58
confidence value 0.31
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Os6PGDH
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.112
NLS score -0.47
Protein Sequence >LOC_Os06g02144.1 protein
MAVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPASFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCI
IDGGNEWYENTERREKAMEERGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQLI
SEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADIFSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDER
VEAAKVFQGDFSSNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWSLNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQ
EIMDRQAAWRRVVCLAINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAAKM

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term catalytic activity
3
GO Category Cellular comBiological Processonent
GO Term peroxisome
4
GO Category Molecular Function
GO Term binding
5
GO Category Molecular Function
GO Term nucleotide binding
6
GO Category Cellular comBiological Processonent
GO Term cytosol
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term response to abiotic stimulus
Presence of Splice variants YES