| RGAP LOCUS ID |
LOC_Os06g01850 |
| RAP-DB ID |
Os06g0107700 |
| Function |
ferredoxin--NADP reductase, chloroplast precursor, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
11 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
3.489 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.04 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.93 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsLFNR2|LFNR2 |
| Function assigned as per literature |
LFNR2 interacts with LIR1 |
| Subcellular localization as per literature |
OsLFNR2|LFNR2 colocalize with LIR1 in chloroplast |
| Cells used for localization experiment |
tobacco mesophyll protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
26941088 |
| Reference of localization |
http://www.plantcell.org/content/28/3/712.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.138 |
| NLS score |
-0.13 |
| Protein Sequence |
>LOC_Os06g01850.1 protein
MAAVTAAAVSTSAAAAVTKASPSPAHCFLPCPPRTRAAHQRGLLLRAQVSTTDAAAVAAAPAKKEKISKKHDEGVVTNKYRPKEPYVGKCLLNTKITADD
APGETWHMVFSTEGEIPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGSDVKITGPVG
KEMLMPKDPNANIIMLATGTGIAPFRSFLWKMFFEKYDDYKFNGLAWLFLGVPTSSSLLYKEEFDKMKAKAPENFRVDYAVSREQTNAQGEKMYIQTRMA
EYKEELWELLKKDHTYVYMCGLKGMEKGIDDIMVSLAAKDGIDWADYKKQLKKGEQWNVEVY |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
extracellular region |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
RNA binding |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| Presence of Splice variants |
No |
