LOC_Os06g01400

Expression Profile

RGAP LOCUS ID LOC_Os06g01400
RAP-DB ID Os06g0103600
Function glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 1.315

3) NUCPRED Prediction
localization Non Nuclear
score 0.46

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.49
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RA1
Function assigned as per literature RA1 is involved in early chloroplast development and establishment of the plastidic ribosome system in rice
Subcellular localization as per literature Chloroplast
Cells used for localization experiment tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31015088
Reference of localization https://www.sciencedirect.com/science/article/abs/pii/S0981942819301421
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.11
NLS score 0.76
Protein Sequence >LOC_Os06g01400.1 protein
MAGLAPPPLLLLPLSSSLSPAAASHHPTSPPSRTRRRRRLLSAVASADGDAPSPVSVSASAATKGPSSSSVLTFQQAIQRLQDYWASVGCAVMQCSNTEV
GAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGDNPNRLQRHTQFQVILKPDPGNSQDLFLHSLSALGINVREHDIRFVEDNWESPVLGAWGLGWEV
WMDGMEITQFTYFQQSGSLPLLPVSVEITYGLERILMSLQGVDHFKNIQYTKGITYGELFLENEKEMSAYYLEHANVDNIQKHFDDFEEEARSLLSLWLP
IPAYDHVLKASHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWVKTRENLGYPLGTYQESNLIYPHVSEKPSRKGVVGQPRAFVLEIGTEELPPHDV
IEATKQLEKSLIQILEKRRLSHGKVRSYGTPRRLAVVVENLNMKQMEEEIELRGPPVAKAFDQEGRPTKAAEGFCRKNNVLIDSLYRRTDGKTEYIYARV
KESARFADEVLTEDLPTIISGISFPKSMRWNSNIVFSRPIRWIFALHGDLIVPFCFAGISSGNQSCGLRNSSLANFKVEAAELYLHTLEKAGILIDMQER
KQRILHDSSILAEGVGGDIIAPDSLVQEVINLVEAPMPIIGRYDVSFLALPKDVLITVMQKHQKYFPVTSKTMGNLLPCFITVANGAIKEEVVRKGNEAV
LRARYEDAKFFYKMDTQKKLSEFRDQLSSILFHERLGTMLDKMKRVENTVAEVALLLGINEKMIPAIKDAAALAMSDLATNIVTEFTSLAGIMARHYALR
DGLSEQIAEALFEITLPRFSGDVFPKTDPGIVLAVTDRLDSLVGLFGAGCQPSSTNDPFGLRRISYGLVQILVENKKNFDLTKALTLVAEEQPITIDSGV
IDEVVQFVTRRLEQLLVDEGINCEIVRSVLIERANCPYLASQTAIEMEAFSRTEDFPKIVEAYSRPARIIRGKEIGSALEVDASVFEKDEERALWSAYLE
VADKIHPGVDIKAFADASLELLQPLEDFFTNVFVMAEDERVRNNRLALLTKVASLPKGIADLSVLPGF

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term translation
4
GO Category Biological Process
GO Term embryo development
5
GO Category Cellular comBiological Processonent
GO Term mitochondrion
6
GO Category Biological Process
GO Term reproduction
7
GO Category Biological Process
GO Term post-embryonic development
8
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No