| RGAP LOCUS ID |
LOC_Os05g51830 |
| RAP-DB ID |
Os05g0597100 |
| Function |
ZOS5-12 - C2H2 zinc finger protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
4.539 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.43 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.77 |
| confidence value |
0.98 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
C2H2 |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsHDT1|HDT701 |
| Function assigned as per literature |
role in regulating seed germination in response to abiotic stresses in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Arabidopsis protoplast |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
25653654 |
| Reference of localization |
https://www.frontiersin.org/articles/10.3389/fpls.2014.00764/full#B27 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.145 |
| NLS score |
-0.22 |
| Protein Sequence |
>LOC_Os05g51830.1 protein
MEFWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKTASVFFSGYKVSQPAEED
EMDFDSEEVEDEEEEEKIIPAPRANGKVEGKENEQKKQGKTDSSASKSKAAVNDDDDDDDSDEDDSEDEDLSPEDDDDDSSEDDSSEDDEDESDEEDTPK
KPETGKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVHVATPHPAKQASKTPVNDKSKEKSPKSGGGSISCKSCSKTFNSEMALQSHSKAKHPAK |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
nucleic acid binding |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleolus |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| Presence of Splice variants |
No |
