LOC_Os05g51820

Expression Profile

RGAP LOCUS ID LOC_Os05g51820
RAP-DB ID Os05g0597000
Function helix-loop-helix DNA-binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5.5

2) CELLO Prediction
localization Nuclear
score 3.661

3) NUCPRED Prediction
localization Nuclear
score 0.83

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.95
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMUTE
Function assigned as per literature OsMUTE has role in stomatal developmental stage in rice
Subcellular localization as per literature OsMUTE interacted with OsICE1 and OsICE2 in nucleus
Cells used for localization experiment epidermal cells of Nicotiana benthamiana (tobacco) leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 30825332
Reference of localization https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15766
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.097
NLS score -0.16
Protein Sequence >LOC_Os05g51820.1 protein
MSHIAVERNRRRQMNDHLKVLRSLTPAFYIKRGDQASIIGGAIDFIKELQTLLQSLEAQKKRRQQPQAHLISPASISASGGGSPSPTPSPRSLITSCSPT
AAAGSSAGSSSSISPKDENKQQLQLVAELAACCNSPMADVEARISGANVLLRTLSRRAPPVRIIALLESLHLEVLHLNITTMDDTVLYSFVLKIGLDCHL
SVDDLAMEVHQSFMPPPAAHPDNHLHS

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term post-embryonic development
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No