LOC_Os05g51630
| RGAP LOCUS ID | LOC_Os05g51630 | ||||
| RAP-DB ID | Os05g0594700 | ||||
| Function | early-responsive to dehydration protein-related, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | plas | ||||
| score | 8 | ||||
2) CELLO Prediction |
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| localization | PlasmaMembrane | ||||
| score | 4.847 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.4 | ||||
4) Y-Loc Prediction |
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| localization | Chloroplast | ||||
| score | 8 | ||||
| confidence value | 0.47 | ||||
| Number Of Software Predicting Nucleus | 0 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsOSCA1.2 | ||||
| Function assigned as per literature | OSCA1.2 mediates transport pathway gating under osmotic stress | ||||
| Subcellular localization as per literature | Plasma membrane | ||||
| Cells used for localization experiment | Xenopus oocytes | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 31227607 | ||||
| Reference of localization | https://www.pnas.org/content/116/28/14309.long | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 2 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.108 | ||||
| NLS score | 0.09 | ||||
| Protein Sequence | >LOC_Os05g51630.1 protein MATVSDIGLSAAINVSMAVAFLLVFAFLRLQPINDRVYFPKWYLRGMRDSPVSSGAAVQKVVNLNMRSYLKFLSWMPAALKMPEDELINHAGLDSAVYLR IYLTGIKIFVPISILASLVLFPVNWTNDTLDSMKVVHSKIDKLSISNIPYGSNRFVTHLVMAYAVTFWTCYVLFREYEIITTMRLRFLASEKRRPDQFTV LVRNIPPDPDESISELVEHFFLVNHPDHYLRHQVVYNANKLADLVEKKKKLQNWLDYYQLKYERNPSKRPTTKTGFLGCFGSEVDAIEYYKAEIEKIGKE EADERQKIMKDPQSAVPAAFVSFRSRWGAAVCAQTQQTSNPTVWITEWAPEPRDVYWNNLSIPFVSLTVRRLIVAVAFFFLNFFYVIPIAFVQSLASLEG IEKALPFLKPLIKIDVIKSFIQGFLPGIALKVFLILLPTILMFMSKFEGLISQSSLERRSASKYYIFLFFNVFLGSIVTGSALDQLKAYIHQSANEIPRT IGVAIPMRATFFITYVMVDGWTGVAGEILRLRALIIFHLKNFFLVKTEKDREEAMDPGSICFDWCEPRIQLYFLLGLVYAVVTPLLLPFILVFFGLAYVV YRHQIINVYNQQYESGAQFWPSVHGRIIIALIVSQLLLIGLLSTKGFEETTPVLVVLPVLTFWFYKYCKNRFEPAFVRNPLQEAMRKDTLERAREPTFDL KAYLANAYLHPVFKGREEEDNMSISEDVGMEEVIVPTKRQSRRNTPAQSKYEGSDTLSLPETVHER |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | YES | ||||