LOC_Os05g51420

Expression Profile

RGAP LOCUS ID LOC_Os05g51420
RAP-DB ID Os05g0591900
Function hypersensitive-induced response protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Cytoplasmic
score 1.726

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Cytoplasm
score 82
confidence value 0.79
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHIR3
Function assigned as per literature  OsHIR3 is required for cell death by oxidative stress and salicylic acid
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26297139
Reference of localization http://www.plantphysiol.org/content/plantphysiol/early/2015/08/21/pp.15.00445.full.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.115
NLS score -0.47
Protein Sequence >LOC_Os05g51420.1 protein
MMYEHSGTAGSYLRTAAMGNLFCCVQVDQSTVAIREQFGKFDAVLEPGCHCLPWFAGKRIAGHLTLRLQQLDVRCETKTKDNVFVNVVASIQYRALAGKA
NDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDDAFEQKNDIAKAVEDELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKI
VQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLITQYFDTMKEIGASSKASSVFIPHGPGAVRDIATQIRDGLLQGQA
TTTSH

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term protein modification process
5
GO Category Cellular comBiological Processonent
GO Term vacuole
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES