LOC_Os05g51090

Expression Profile

RGAP LOCUS ID LOC_Os05g51090
RAP-DB ID Os05g0588500
Function nodulin MtN3 family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization vacu
score 6

2) CELLO Prediction
localization PlasmaMembrane
score 4.992

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.7
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSWEET5
Function assigned as per literature OsSWEET5 plays a crucial role in regulating the crosstalk between sugar and auxin in rice
Subcellular localization as per literature plasma membrane
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24709840
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0094210
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.068
NLS score 0.64
Protein Sequence >LOC_Os05g51090.1 protein
MVMNPDAVRNVVGIIGNLISFGLFLSPLPTFVTIVKKKDVEEFVPDPYLATFLNCALWVFYGLPFIHPNSILVVTINGTGLLIEIAYLAIYFAYAPKPKR
CRMLGVLTVELVFLAAVAAGVLLGAHTYDKRSLIVGTLCVFFGTLMYAAPLTIMKQVIATKSVEYMPFTLSLVSFINGICWTIYAFIRFDILITIPNGMG
TLLGAAQLILYFCYYDGSTAKNKGALELPKDGDSSAV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Biological Process
GO Term transport
4
GO Category Biological Process
GO Term cellular process
5
GO Category Cellular comBiological Processonent
GO Term plasma membrane
6
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No