LOC_Os05g51060

Expression Profile

RGAP LOCUS ID LOC_Os05g51060
RAP-DB ID Os05g0588200
Function DNA ligase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Extracellular
score 1.104

3) NUCPRED Prediction
localization Non Nuclear
score 0.16

4) Y-Loc Prediction
localization Chloroplast
score 3
confidence value 0.13
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPTD1
Function assigned as per literature OsPTD1 along with OsSHOC1 is essential for rice fertility and CO formation, possibly by stabilizing the recombinant intermediates during meiosis
Subcellular localization as per literature Nucleus, cytoplasm, and plasma membrane
Cells used for localization experiment rice protoplasts and in tobacco epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 30589140
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.14214
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.109
NLS score -0.47
Protein Sequence >LOC_Os05g51060.1 protein
MERSTHSTGWTCLPPPPPEPAAPGRGVCAMSTSWRDKQQPSLINFIAAFLAANSYRLNFLSISPDFIFNNGELSVAFIFETNWDCQNEGAVFSRVNMLKR
QLKHLYVVVAVPTKEQNESFNRSYHKYGMKLGFPTFVPVTDPEMGFEKIVKIAHALGVCKQQDIISRLKNEREQAVQCTDSFLRVLTSIPGIDNHDANAL
AQAIGSIEAIAKASKKFILENTDLSTDKAETIVRFFRDPQYYLSPKIN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No