LOC_Os05g50930

Expression Profile

RGAP LOCUS ID LOC_Os05g50930
RAP-DB ID Os05g0586600
Function RNA polymerase sigma factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8.5

2) CELLO Prediction
localization Nuclear
score 3.438

3) NUCPRED Prediction
localization Nuclear
score 0.89

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.11
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category Orphans

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSIG5
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 5
Number of PAT7 1
Number of Bipartite 2
Basic residues % 0.186
NLS score 2.45
Protein Sequence >LOC_Os05g50930.1 protein
MASTVTTPSRPVSAGCHRRSPRRSAPVVLSLGGGPRRRTPSSTSCSALASPAKQGTAKLPPPQPTASRTAAADAERERERTDYNEVAAALESIYKLSPAV
VEEKDADEEDEKSKQTKRKRKGRVGRSRNATVTVRSSRRRRRGQRMDLGKRVEMRRREEEEGGGGAGKVEDEERGFEEMLLREHAVSTDMGSLDWKRMKI
PPVLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGA
NGLITAIDRFEPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHAR
NRVTQEELINEVTDDDAIGVDTSSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Molecular Function
GO Term transferase activity
6
GO Category Molecular Function
GO Term molecular_function
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES