LOC_Os05g50890

Expression Profile

RGAP LOCUS ID LOC_Os05g50890
RAP-DB ID Os05g0586200
Function OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 1.892

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Cytoplasm
score 86
confidence value 0.53
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsJar1|OsGH3.5|OsGH3-5
Function assigned as per literature OsGH3-5 is involved in controlling rice leaf angles
Subcellular localization as per literature Nucleus, cytoplasm and the ER
Cells used for localization experiment Rice protoplast cells and Nicotiana benthamiana cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 24995795
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/pce.12397
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.1
NLS score -0.22
Protein Sequence >LOC_Os05g50890.1 protein
MTICSCEETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGLGGRTDAESYKSCIPLCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHG
KPKFIPFNDELLETTLQIYRTSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCCSPDEVIFGPDFHQSLYCHLL
CGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRDGVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTG
SMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLEKPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFA
GLYRYRLGDVVKIARFHNSTPELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVERSSDPGRYVIFWELSGDASDEVLSSCANA
LDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFLSLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTAYGF

GO Analysis
1
GO Category Biological Process
GO Term protein modification process
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term response to biotic stimulus
7
GO Category Biological Process
GO Term biological_process
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term response to abiotic stimulus
10
GO Category Cellular comBiological Processonent
GO Term cytoplasm
11
GO Category Biological Process
GO Term response to external stimulus
12
GO Category Biological Process
GO Term signal transduction
13
GO Category Molecular Function
GO Term transferase activity
14
GO Category Molecular Function
GO Term catalytic activity
15
GO Category Biological Process
GO Term metabolic process
16
GO Category Cellular comBiological Processonent
GO Term vacuole
17
GO Category Molecular Function
GO Term protein binding
18
GO Category Biological Process
GO Term lipid metabolic process
Presence of Splice variants YES